Publications

• Efficient Pairwise Neuroimage Analysis using the Soft Jaccard Index and 3D Keypoint Sets
  L. Chauvin, K. Kumar, C. Desrosiers, W.M. Wells III, M. Toews
  IEEE Transactions on Medical Imaging.
  PDF © IEEE, 2021.
• GPU optimization of the 3D Scale-invariant Feature Transform Algorithm and a Novel BRIEF-inspired 3D Fast Descriptor
  Jean Baptiste Carluer, L. Chauvin, Jax Jie Luo, Rola Harmouche, Ines Machado, W.M. Wells III, M. Toews
  IEEE Transactions on Medical Imaging.
  PDF Arxiv, 2021.
• Neuroimage signature from salient keypoints is highly specific to individuals and shared by close relatives
  L. Chauvin, K. Kumar, C. Wachinger, C. Desrosiers, M. Vangel, J. De Guise, W.M. Wells III, M. Toews
  NeuroImage 2020.
  PDF © Elsevier, 2020.
• Detecting Defects in Materials using Deep Convolutional Neural Networks
  Q. Bohadjian, N. Vanderesse, M. Toews, P. Bocher
  ICIAR 2020.
  PDF © Elsevier, 2020.
• Analyzing Brain Morphology on the Bag-of-Features Manifold
  L. Chauvin, K. Kumar, C. Desrosiers, J. De Guise, W.M. Wells III, M. Toews
  Information Processing in Medical Imaging (IPMI), 2019.
  PDF © Springer, 2019.
  Oral Presentation
• A comparison of thin-plate spline deformation and finite element modeling to compensate for brain shift during tumor resection
  Sarah Frisken, Jie Luo, Matthew Toews, Ines Machado, Miaomiao Zhang, Frank Preiswerk, Alireza Sedghi, Hongyi Ding, Steve Pieper, Polina Golland, Alexandra Golby, Masashi Sugiyama, William M. Wells III,
  International Journal of Computer Assisted Radiology and Surgery 2019
  PDF © Springer, 2019.
• Deformable MRI-Ultrasound registration using correlation-based attribute matching for brain shift correction: Accuracy and generality in multi-site data.
  Ines Machado, Jie Luo, Matthew Toews, Sarah Frisken, Miaomiao Zhang, Frank Preiswerk, Alireza Sedghi, Hongyi Ding, Steve Pieper, Polina Golland, Alexandra Golby, Masashi Sugiyama, William M. Wells III,
  NeuroImage 2019
  PDF © Springer, 2019.
• A Feature-Driven Active Framework for Ultrasound-Based Brain Shift Compensation
  Jie Luo, Matthew Toews, Ines Machado, Sarah Frisken, Miaomiao Zhang, Frank Preiswerk, Alireza Sedghi, Hongyi Ding, Steve Pieper, Polina Golland, Alexandra Golby, Masashi Sugiyama, William M. Wells III,
  MICCAI, 2018, v4, pp30-37
  PDF © Springer, 2018.
• Multi-modal brain fingerprinting via 3D SIFT: A manifold approximation based framework
  Kuldeep Kumar, Matthew Toews, Laurent Chauvin, Olivier Colliot, Christian Desrosiers,
  NeuroImage, 2018.
  PDF © NeuroImage, 2018.
• Non-rigid registration of 3D ultrasound for neurosurgery using automatic feature detection and matching
  Ines Machado, Matthew Toews, Jax Jie Luo, Prashin Unadkat, Walid Essayed, Elizabeth George, Pedro Teodoro, Herculano Carvalho, Jorge Martins, Polina Golland, Steve Pieper, Sarah Frisken, Alexandra Golby and William M. Wells III.
  International Journal of Computer Assisted Radiology and Surgery, 2018.
  PDF © Springer, 2018.
• Novel Radiomic Features based on Joint Intensity Matrices for Predicting Glioblastoma Patient Survival Time
  Ahmad Chaddad, Paul Daniel, Christian Desrosiers, Matthew Toews, Bassam Abdulkarim.
  IEEE Journal of Biomedical and Health Informatics, 2018.
  PDF © IEEE, 2018.
• Phantomless Auto-Calibration and Online Calibration Assessment for a Tracked Freehand 2D Ultrasound Probe
  Matthew Toews and William M. Wells III.
  IEEE Transactions on Medical Imaging, 2018, 37(1):262-272.
  PDF © IEEE, 2017.
• Fiberprint: A subject fingerprint based on sparse code pooling for white matter fiber analysis
  Kuldeep Kumar, Christian Desrosiers, Kaleem Siddiqi, Olivier Colliot, Matthew Toews
  NeuroImage, 2017.
  PDF © NeuroImage, 2017.
• Hybrid MRI-Ultrasound Acquisitions, and Scannerless Real-Time Imaging
  Frank Preiswerk, Matthew Toews, Cheng-Chieh Cheng, Jr-yuan George Chiou, Chang-Sheng Mei, Lena F. Schaefer, W. Scott Hoge, Benjamin M. Schwartz, Lawrence P. Panych, Bruno Madore.
  Magnetic Resonance in Medicine. 78(3):897-908, 2017.
  PDF © Wiley, 2017.
• Multi-scale radiomic analysis of sub-cortical regions in MRI related to autism, gender and age
  Ahmad Chaddad, Christian Desrosiers, Matthew Toews
  Nature Scientific Reports, (7)45639, pp. 1-17, 2017.
  PDF © Nature Publishing, 2017.
• How Similar are Siblings? How are Siblings Similar? Large-Scale Imaging Genetics Using Local Image Features
  Matthew Toews and William M. Wells III.
  International symposium on biomedical engineering (ISBI), 2016.
  PDF © IEEE, 2016.
• Multi Texture Analysis of Colorectal Cancer Continuum Using Multispectral Imagery
  Ahmad Chaddad, Christian Desrosiers, Ahmed Bouridane, Matthew Toews, Lama Hassan, Camel Tanougas.
  PloS one 11(2), 2016: e0149893.
  PDF © Creative Commons Attribution (CC BY) license, 2016.
• Local Discriminative Characterization of MRI for Alzheimer's Disease
  Ahmad Chaddad, Christian Desrosiers, Matthew Toews.
  International symposium on biomedical engineering (ISBI), 2016.
  PDF © SPIE, 2016.
• Robust spatio-temporal registration of 4D cardiac ultrasound sequences
  Jørn Bersvendsen, Matthew Toews, Adriyana Danudibroto, William M. Wells, Stig Urheim, Raúl San José Estépar, Eigil Samset.
  SPIE Medical Imaging, 2016. 9790-14.
  Oral Presentation
  PDF © SPIE, 2016.
• Phenotypic characterization of glioblastoma identified through shape descriptors
  Ahmad Chaddad, Christian Desrosiers, Matthew Toews.
  SPIE Medical Imaging, 2016. 9785-94.
  PDF © SPIE, 2016.
• GBM heterogeneity characterization by radiomic analysis of phenotype anatomical planes
  Ahmad Chaddad, Christian Desrosiers, Matthew Toews.
  SPIE Medical Imaging, 2016. 9784-75.
  PDF © SPIE, 2016.
• A Feature-based Approach to Big Data Analysis of Medical Images
  M. Toews, C. Wachinger, R. S. J. Estepar, W.M. Wells III.
  Information Processing in Medical Imaging (IPMI), 2015.
  PDF © Springer, 2015.
  Elected Oral Presentation 2015.
• Hybrid Utrasound and MRI Acquisitions for High-Speed Imaging of Respiratory Organ Motion
  F. Preiswerk, M. Toews, W.S. Hoge, J.G. Chiou, W.M. Wells III, B. Madore.
  Medical Image Computing and Computer Assisted Intervention (MICCAI), 2015.
  PDF © Springer, 2015.
• Keypoint Transfer Segmentation
  C. Wachinger, M. Toews, G. Langs, W.M. Wells IIIi, P. Golland.
  Information Processing in Medical Imaging (IPMI), 2015.
  Oral Presentation
  PDF © Springer, 2015.
• Probabilistic Diffeomorphic Registration: Representing Uncertainty.
  D. Wasserman, M. Toews, M. Niethammer, W.M. Wells III.
  International Workshop on Biomedical Image Registration(WBIR), LNCS 8545, 2014, pp. 72-82.
  Oral Presentation.
  PDF © Springer, 2014.
• Detecting Rapid Organ Motion using a Hybrid MR-Ultrasound Setup and Bayesian Data Processing.
  M. Toews, C.S. Mei, R. Chu, W. S. Hoge, L. P. Panych, B. Madore
  Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 2014, pp. 7309. Oral Presentation
  PDF © ISMRM, 2014.
• Invariant Feature-based Alignment of Volumetric Multi-modal Images.
  M. Toews, L. Zöllei, W.M. Wells III.
  Information Processing in Medical Imaging (IPMI), 2013, pp. 25-36, 2013.
  Oral Presentation.
  PDF © Springer, 2013.
  Code/binaries(Windows, Linux) for 3D feature extraction and multi-modal correspondence.
• Efficient and Robust Model-to-Image Alignment using 3D Scale-Invariant Features.
  M. Toews, W.M. Wells III.
  Medical Image Analysis, 17(3), 2013, pp 271-282.
  PDF © Elsevier, 2013.
  Code/binaries(Windows, Linux) for 3D feature extraction.
• Chapter 1: Shape Analysis for Brain Structures.
  B. Ng, M. Toews, S. Durrleman, Y. Shi.
  Advances of Shape Analysis in Medical Image Analysis.
  Springer, Editors Shuo Li and Joćo Manuel R. S. Tavares. To Appear, 2013.
• An Automated Initialization System for Robust Model-Based Segmentation of Lungs in CT Data.
  G. Gill, M. Toews, R. R. Beichel.
  5th Intl. Workshop on Pulmonary Image Analysis (MICCAI), 2013.
  PDF © Springer 2013.
  Link @ MICCAI, 2013.
• Inter-slice Correspondence for 2D Ultrasound-guided Procedures.
  M. Toews, Alexandra Golby, W.M. Wells III.
  Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging (MICCAI), LNCS, 2013.
  Oral Presentation.
  PDF © Springer 2013.
  Link @ MICCAI, 2013.
• Fiber feature map based landmark initialization for highly deformable DTI registration.
  A. Gupta, M. Toews, R. Janardhana, Y. Rathi, J. Gilmore, M. Escolar, M.A. Styner.
  SPIE Medical Imaging, 2013.
  Link @ SPIE, 2013.
• Boosting MR Temporal Resolution using Rapid Ultrasound Measurements, for Motion-Tracking Purposes.
  M. Toews, C.S. Mei, R. Chu, W. S. Hoge, B. M. Schwartz, L. P. Panych, B. Madore
  Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 2013, pp. 478. Oral Presentation
  PDF © ISMRM, 2013.
• A Feature-based Developmental Model of the Infant Brain in Structural MRI.
  M. Toews, W.M. Wells III, Lilla Zöllei.
  Medical Image Computing and Computer Assisted Intervention (MICCAI), 2012.
  PDF © Springer, 2012.
• Strategy For Simultaneous Region-tracking and Temperature-monitoring in the Liver During Free-breathing.
  B. Madore, M. Toews, C-S. Mei, R. Chu, W. S. Hoge, L. P. Panych
  Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 2012, pp. 1576.
  PDF © ISMRM, 2012.
• Chapter 3: Image Registration and Segmentation.
  T. Kapur, M. Toews, J. Egger, W. M. Wells III.
  Intraoperative Imaging and Image Guided Therapy.
  Springer, Editor Ferenc A. Jolesz, MD. To Appear, 2013.
  Link @ Springer, 2013.
• Feature-Based Morphometry: Discovering Group-related Anatomical Patterns.
  Toews, Matthew and Wells III, William M., and Collins, D. Louis and Arbel, Tal.
  NeuroImage, 2010, Vol 49 (3), 2010, pp. 2318-2327.
  PDF © Elsevier, 2010.
  Slides
  Code/binaries(Windows) for 3D feature extraction.
• A Mutual-Information Scale-space for Image Feature Detection and Feature-based Classification of Volumetric Brain Images.
  Toews, Matthew and Wells III, William M.
  IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA), CVPR 2010. 10|16|60.
  PDF © IEEE, 2010.
• Gender Classification from Unconstrained Video Sequences.
  Demirkus, Meltem and Toews, Matthew and Clark, James and Arbel, Tal.
  IEEE Workshop on Analysis and Modelling of Faces and Gestures (AMFG), CVPR 2010, pp. 55-62.
  PDF © IEEE, 2010.
• Exploring Cortical Folding Pattern Variability Using Local Image Features.
  Rajamalingham, Rishi and Toews, Matthew and Collins, D. Louis and Arbel, Tal.
  Medical Computer Vision (MCV), MICCAI 2010.
  PDF © Springer, 2010.
• Feature-based Morphometry.
  Toews, Matthew and Wells III, William M., and Collins, D. Louis and Arbel, Tal.
  Medical Image Computing and Computer Assisted Intervention (MICCAI), 2009, Part II, LNCS 5762, pp. 109-116. 40|220|804
  PDF © Springer, 2009.
• Bayesian Registration via Local Image Regions: Information, Selection and Marginalization.
  Toews, Matthew and Wells III, William M.
  Information Processing in Medical Imaging (IPMI), 2009. pp. 435-446. 17|22|61
  PDF © Springer, 2009.
• SIFT-Rank: Ordinal Descriptors for Invariant Feature Correspondence.
  Toews, Matthew and Wells III, William M.
  International Conference on Computer Vision and Pattern Recognition (CVPR), 2009. pp 172-177. 61|322|1464
  PDF © IEEE, 2009.
  Code/binaries (Windows and Linux).
• Automatically Learning Cortical Folding Patterns.
  Toews, Matthew and Collins, D. Louis and Arbel, Tal.
  IEEE International Symposium on Biomedical Imaging (ISBI), 2009, pp. 1330-1333. 337|603
  PDF © IEEE, 2009.
• A Probabilistic Model to Learn, Detect, Localize and Classify Patterns in Arbitrary Images.
  Toews, Matthew.
  PhD Thesis, May, 2008.
  PDF
• Detection, Localization and Sex Classification of Faces from Arbitrary Viewpoints and Under Occlusion.
  Toews, Matthew and Arbel, Tal.
  IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2009, Volume 31(9), pp. 1567-1581, 2009.
  PDF © IEEE, 2009.
  
Data
FERET labels

• Detecting, Localizing and Classifying Visual Traits from Arbitrary Viewpoints using Probabilistic Local Feature Modeling.
  Toews, Matthew and Arbel, Tal.
  IEEE Workshop on Analysis and Modeling of Faces and Gestures, 2007. 8|16|55
  Oral Presentation
  PDF © Springer-Verlag, 2007.
• Detecting and Localizing 3D Object Classes using Viewpoint Invariant Reference Frames.
  Toews, Matthew and Arbel, Tal.
  IEEE ICCV Workshop on 3D Representation for Recognition, 2007. 0.40|0.60
  Oral Presentation
  PDF © IEEE, 2007.
• Chapter 13: Parts-based Modeling of Medical Imagery.
  Toews, Matthew and Arbel, Tal.
  Computational Intelligence in Medical Imaging: Techniques and Applications
  CRC Press, pp. 291-326, 2009.
• A Statistical Parts-based Appearance Model of Anatomical Variability.
  Toews, Matthew and Arbel, Tal.
  IEEE Transactions on Medical Imaging (TMI), Special Issue on Computational Neuroanatomy, Vol. 26(4), pp. 497-508, 2007.
  PDF © IEEE, 2007.
• Detection Over Viewpoint via the Object Class Invariant.
  Toews, Matthew and Arbel, T.
  International Conference on Pattern Recognition (ICPR), 2006. 0.15|0.42|2000
  PDF © IEEE, 2006.
• A Statistical Parts-based Appearance Model of Intersubject Variability.
  Toews, Matthew and Collins, Louis D. and Arbel, Tal.
  International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2006. 29|192|578
  PDF © Springer, 2006.
• Fundamental Matrix Estimation via TIP - Transfer of Invariant Parameters.
  Riggi, F. and Toews, Matthew and Arbel, T.
  International Conference on Pattern Recognition (ICPR), 2006. 0.15|0.42|2000
  PDF © IEEE, 2006.
  Presentation
• Maximum A Posteriori Local Histogram Estimation for Image Registration.
  Toews, Matthew and Collins, Louis D. and Arbel, T.
  International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct. 26-29, 2005. 239|632
  PDF © Springer, 2005.
• Entropy-of-likelihood Feature Selection for Image Correspondence.
  Toews, Matthew and Arbel, T.
  Proceedings of the 9th IEEE International Conference on Computer Vision (ICCV), Oct. 13-16, 2003, Page(s): 1041 -1047. 0.20|943
• Entropy-of-likelihood Feature Point Selection for Image Correspondence.
  Toews, Matthew.
  Master's Thesis, August, 2003.